Gistic Result

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├── PC_WGS_208pairs_filt_js100.D.cap1.5.mat
├── PC_WGS_208pairs_filt_js100.all_data_by_genes.txt
├── PC_WGS_208pairs_filt_js100.all_lesions.conf_95.txt
├── PC_WGS_208pairs_filt_js100.all_thresholded.by_genes.txt
├── PC_WGS_208pairs_filt_js100.amp_genes.conf_95.txt
├── PC_WGS_208pairs_filt_js100.amp_qplot.pdf
├── PC_WGS_208pairs_filt_js100.amp_qplot.png
├── PC_WGS_208pairs_filt_js100.broad_data_by_genes.txt
├── PC_WGS_208pairs_filt_js100.broad_significance_results.txt
├── PC_WGS_208pairs_filt_js100.broad_values_by_arm.txt
├── PC_WGS_208pairs_filt_js100.del_genes.conf_95.txt
├── PC_WGS_208pairs_filt_js100.del_qplot.pdf
├── PC_WGS_208pairs_filt_js100.del_qplot.png
├── PC_WGS_208pairs_filt_js100.focal_dat.0.7.mat
├── PC_WGS_208pairs_filt_js100.focal_data_by_genes.txt
├── PC_WGS_208pairs_filt_js100.freqarms_vs_ngenes.pdf
├── PC_WGS_208pairs_filt_js100.peak_regs.mat
├── PC_WGS_208pairs_filt_js100.perm_ads.mat
├── PC_WGS_208pairs_filt_js100.raw_copy_number.pdf
├── PC_WGS_208pairs_filt_js100.raw_copy_number.png
├── PC_WGS_208pairs_filt_js100.regions_track.conf_95.bed
├── PC_WGS_208pairs_filt_js100.sample_cutoffs.txt
├── PC_WGS_208pairs_filt_js100.sample_seg_counts.txt
├── PC_WGS_208pairs_filt_js100.scores.0.7.mat
├── PC_WGS_208pairs_filt_js100.scores.gistic
├── PC_WGS_208pairs_filt_js100.wide_peak_regs.mat
└── gistic_inputs.mat


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